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OpGen: Bibliography, Presentations and Posters
| Publications | ||
|---|---|---|
| Author | Date | Reference |
| Shukla, S. et. al. | 2009 | "Optical Mapping Reveals A Large Genetic Inversion between Two Methicillin-Resistant Staphylococcus aureus Strains" Journal of Bacteriology(2009) September |
| Barrangou, R. et. al. | 2009 April | "Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04." Journal of Bacteriology (2009) April17. |
| Kotewicz, ML, et. al. | 2008 | "Optical mapping and 454 sequencing of Escherichia coli O157:H7 isolates linked to the US 2006 spinach-associated outbreak." Microbiology (2008)154, 3518-3528. |
| Nagarajan, N., et al. | 2008 Mar | "Scaffolding and validation of bacterial genome assemblies using optical restriction maps." Bioinformatics. 2008 Mar24. [Epub - ahead of print] |
| Latreille P, et al. | 2007 Sep | "Optical mapping as a routine tool in bacterial genome sequencing." BMC Genomics. 2007 Sep14;4(1):321. |
| Mussman, M., et al. | 2007 Sep | "Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments." PLoS Biol. 2007 Sep;5(9):e230. |
| Kotewicz ML, et al. | 2007 Jun | "Optical maps distinguish individual strains of Escherichia coli O157:H7." Microbiology. 2007 Jun;153 (Pt 6):1720-33. |
| van het Hoog M, et al. | 2007 | "Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes." Genome Biol. 2007;8(4):R52. |
| Chen Q, et al. | 2006 Apr | "Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12." Microbiology. 2006 Apr;152 (Pt 4):1041-54. |
| Galagan JE, et al. | 2005 Dec | "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae." Nature. 2005 Dec; 438:1105-115. |
| Machida M, et al. | 2005 Dec | "Genome sequencing and analysis of Aspergillus oryzae." Nature. 2005 Dec; 438:1157-1161. |
| Nierman WC, et al. | 2005 Dec | "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus." Nature. 2005 Dec; 438:1151-1156. |
| Presentations and Posters | ||||
|---|---|---|---|---|
| Author | Date | Title | Place | |
| Sotto, A. et. al. | 2010 | "Optical Mapping Reveals A Genetic Insertion IN Colonizing Staphylococcus Aureus Isolated From Diabetic Foot Ulcers" | ASM | 194KB |
| Moore, R. et. al. | 2009 | "Rapid Microbial Identification though the Application of Cartridge-Based Optical Mapping" | AMP | 197KB |
| Wu, G. et. al. | 2009 | "Towards a Systems Biology Approach:Comparative studies of Salmonella entericaserotype Newport strains from the US and the UK to understand the emergence of multi-drug resistant (MDR) strains" | ASM | 152KB |
| Buboltz, A.M. et. al. | 2009 | "Examining Virulence Evolution of Bordetella bronchiseptica using comparative genomics" | Microbial Genomics Meeting | 335KB |
| Chua, K. et. al. | 2009 | "Whole Genome Sequence of ST93-MRSA-IV, a Unigue Australian Clone of Community-Associated, Methicillin-Resistant Staphylococcus aureus" | ICAAC | 1MB |
| Barreau, G. et al | 2009 | "Optical mapping as a means of scaffolding difficult to assemble bacterial genomes: a case study with Lactobacillus helveticus" | SIM | 535KB |
| Bartell, J. et al | 2009 | "Molecular Characterization of Microbacterium Species Recovered from Clinical Ocular and Otic Samples" | ASM | 394KB |
| Briska, A. et al. | 2009 | "A Software System for Validating and Orienting Sequence Contigs Using Optical Maps" | ASM | 5MB |
| Barreau, G. et al. | 2009 | "Finishing a Bacterial Genome with a Graph and an Optical Map" | SFAF | 2MB |
| Durfee, T. et al. | 2009 | "Toward Annotated Bacterial Genomes in a Day" | ASM | 3MB |
| Henkhaus, J. et al. | 2009 | "Identification and Differentiation of Enterococcus species by Optical Mapping." | ASM | 2MB |
| Wagner, T. et al. | 2009 | "Use of Optical Mapping to Identify Prophages in Virulence in Pseudomonas aeruginosa." | ECCMID | 3MB |
| Briska, A. et al. | 2008 | "Optical Mapping Highlights Genomic Diversity for Escherichia coli Clinical Isolates." | ICAAC | 2MB |
| Stahl, B. et al. | 2008 | "The Use of Optical Mapping to Identify Pathogenicity Motifs in Staphylococcus aureus Clinical Isolates." | ICAAC | 1MB |
| Wagner, T. et al. | 2008 | "Use of Optical Mapping to Identify Bacteria from Complex Mixture and Clinical Samples." | ICAAC | 148KB |
| Bartell, J.G. et al. | 2008 | "Characterization of Staphylococcal Isolates by Traditional Methods and Optical Mapping." | R-025, ASM | 1MB |
| Kotewicz, M.L. et al. | 2008 | "Characterization by Optical Mapping of Three Archetypal Chromosomes of Escherichia coli O157:H7 Involved in Three 2006 Outbreaks of E. coli associated with Fresh Produce" | H-125, ASM | 100KB |
| Henkhaus et al. | 2006 | "Comparative Genomics with Optical Mapping: Identifying Genomic Differences in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus." | 14th Annual International Meeting on Microbial Genomics | 1021KB |
| Briska, A. et al. | 2006 | "The Utilization of Optical Mapping in Whole Genome Finishing." | 14th Annual International Meeting on Microbial Genomics | 844KB |
| Henkhaus, J. et al. | 2005 | "Whole Genome Analysis and Comparison using Optical Mapping." | Molecular Medicine Tri-Conference | 3MB |
| Anantharaman TS, et al. | 2005 | "Fast and cheap genome wide haplotype construction via Optical Mapping." Pac Symp Biocomput. 2005:385-96. | Pac Symp Biocomput | |
| Cebula, TA. | 2005 | "DNA Detection Strategies: Sequences, Signatures and Significance." Transcript. | Transcript. https://www.ift.org | 996KB |