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OpGen: Bibliography, Presentations and Posters

Publications
Author Date Reference
Shukla, S. et. al. 2009 "Optical Mapping Reveals A Large Genetic Inversion between Two Methicillin-Resistant Staphylococcus aureus Strains" Journal of Bacteriology(2009) September
Barrangou, R. et. al. 2009 April "Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04." Journal of Bacteriology (2009) April17.
Kotewicz, ML, et. al. 2008 "Optical mapping and 454 sequencing of Escherichia coli O157:H7 isolates linked to the US 2006 spinach-associated outbreak." Microbiology (2008)154, 3518-3528.
Nagarajan, N., et al. 2008 Mar "Scaffolding and validation of bacterial genome assemblies using optical restriction maps." Bioinformatics. 2008 Mar24. [Epub - ahead of print]
Latreille P, et al. 2007 Sep "Optical mapping as a routine tool in bacterial genome sequencing." BMC Genomics. 2007 Sep14;4(1):321.
Mussman, M., et al. 2007 Sep "Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments." PLoS Biol. 2007 Sep;5(9):e230.
Kotewicz ML, et al. 2007 Jun "Optical maps distinguish individual strains of Escherichia coli O157:H7." Microbiology. 2007 Jun;153 (Pt 6):1720-33.
van het Hoog M, et al. 2007 "Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes." Genome Biol. 2007;8(4):R52.
Chen Q, et al. 2006 Apr "Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12." Microbiology. 2006 Apr;152 (Pt 4):1041-54.
Galagan JE, et al. 2005 Dec "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae." Nature. 2005 Dec; 438:1105-115.
Machida M, et al. 2005 Dec "Genome sequencing and analysis of Aspergillus oryzae." Nature. 2005 Dec; 438:1157-1161.
Nierman WC, et al. 2005 Dec "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus." Nature. 2005 Dec; 438:1151-1156.
Presentations and Posters
Author Date Title Place PDF
Sotto, A. et. al. 2010 "Optical Mapping Reveals A Genetic Insertion IN Colonizing Staphylococcus Aureus Isolated From Diabetic Foot Ulcers" ASM 194KB
Moore, R. et. al. 2009 "Rapid Microbial Identification though the Application of Cartridge-Based Optical Mapping" AMP 197KB
Wu, G. et. al. 2009 "Towards a Systems Biology Approach:Comparative studies of Salmonella entericaserotype Newport strains from the US and the UK to understand the emergence of multi-drug resistant (MDR) strains" ASM 152KB
Buboltz, A.M. et. al. 2009 "Examining Virulence Evolution of Bordetella bronchiseptica using comparative genomics" Microbial Genomics Meeting 335KB
Chua, K. et. al. 2009 "Whole Genome Sequence of ST93-MRSA-IV, a Unigue Australian Clone of Community-Associated, Methicillin-Resistant Staphylococcus aureus" ICAAC 1MB
Barreau, G. et al 2009 "Optical mapping as a means of scaffolding difficult to assemble bacterial genomes: a case study with Lactobacillus helveticus" SIM 535KB
Bartell, J. et al 2009 "Molecular Characterization of Microbacterium Species Recovered from Clinical Ocular and Otic Samples" ASM 394KB
Briska, A. et al. 2009 "A Software System for Validating and Orienting Sequence Contigs Using Optical Maps" ASM 5MB
Barreau, G. et al. 2009 "Finishing a Bacterial Genome with a Graph and an Optical Map" SFAF 2MB
Durfee, T. et al. 2009 "Toward Annotated Bacterial Genomes in a Day" ASM 3MB
Henkhaus, J. et al. 2009 "Identification and Differentiation of Enterococcus species by Optical Mapping." ASM 2MB
Wagner, T. et al. 2009 "Use of Optical Mapping to Identify Prophages in Virulence in Pseudomonas aeruginosa." ECCMID 3MB
Briska, A. et al. 2008 "Optical Mapping Highlights Genomic Diversity for Escherichia coli Clinical Isolates." ICAAC 2MB
Stahl, B. et al. 2008 "The Use of Optical Mapping to Identify Pathogenicity Motifs in Staphylococcus aureus Clinical Isolates." ICAAC 1MB
Wagner, T. et al. 2008 "Use of Optical Mapping to Identify Bacteria from Complex Mixture and Clinical Samples." ICAAC 148KB
Bartell, J.G. et al. 2008 "Characterization of Staphylococcal Isolates by Traditional Methods and Optical Mapping." R-025, ASM 1MB
Kotewicz, M.L. et al. 2008 "Characterization by Optical Mapping of Three Archetypal Chromosomes of Escherichia coli O157:H7 Involved in Three 2006 Outbreaks of E. coli associated with Fresh Produce" H-125, ASM 100KB
Henkhaus et al. 2006 "Comparative Genomics with Optical Mapping: Identifying Genomic Differences in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus." 14th Annual International Meeting on Microbial Genomics 1021KB
Briska, A. et al. 2006 "The Utilization of Optical Mapping in Whole Genome Finishing." 14th Annual International Meeting on Microbial Genomics 844KB
Henkhaus, J. et al. 2005 "Whole Genome Analysis and Comparison using Optical Mapping." Molecular Medicine Tri-Conference 3MB
Anantharaman TS, et al. 2005 "Fast and cheap genome wide haplotype construction via Optical Mapping." Pac Symp Biocomput. 2005:385-96. Pac Symp Biocomput  
Cebula, TA. 2005 "DNA Detection Strategies: Sequences, Signatures and Significance." Transcript. Transcript. https://www.ift.org 996KB