| Publications |
|---|
| Author |
Date |
Reference |
Abstract |
| Brown, C.T., et al. |
2011 Oct |
"Whole-Genome Sequencing and Phenotypic Analysis of Bacillus subtilis Mutants Following Evolution under Conditions of Relaxed Selection for Sporulation." Applied and Environmental Microbiology. |
|
| Weill, F-X., et al. |
2011 Oct |
"Escherichia coli O104:H4 South-West France, June 2011." The Lancet. |
|
| Desjardins, C.A., et al. |
2011 Oct |
"Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis." PLoS Genetics. |
|
| Schott, T., et al. |
2011 Oct |
"Comparative Genomics of Helicobacter pylori and the human-derivedHelicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans." BMC Genomics. |
|
| Turner, P.C., et al. |
2011 Oct |
"Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes." Journal of Industrial Microbiology & Biotechnology. |
|
| Wang, N. et al. |
2011 Sep |
"Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1 causing citrus bacterial spot and related strains provides insights into virulence and host-specificity." Journal of Bacteriology. |
|
| Santos, A., et al. |
2011 Sep |
"Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence." Veterinary Research. |
|
| Riley, M.C., et al. |
2011 Aug |
"Rapid Whole Genome Optical Mapping of Plasmodium falciparum." Malaria Journal. |
|
| Mellmann, A., Harmsen, D., et al. |
2011 Jul |
"Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology." PLoS One. |
|
| Ziegler, D.R. |
2011 Jul |
"The genome sequence of Bacillus subtillus subsp. Spizizenii W23:insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics." Microbiology. |
|
| Fricke, W.F., et al. |
2011 Jul |
"Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-mediated Adaptive Sublineage Evolution." Journal of Bacteriology. |
|
| Petersen, R.F., et al. |
2011 Jun |
"Molecular Characterization of Salmonella Typhimurium Highly Successful Outbreak Strains." Foodborne Pathogens and Disease. |
|
| Eppinger, M., et al. |
2011 May |
"Genome Signatures of Escherichia coli O157:H7 Isolates from the Bovine Host Reservoir." Applied Environmental Microbiology. |
|
| Macklaim, J.M., et al. |
2011 Mar |
"At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1." PNAS. |
|
| Gibbons, H.S., et al. |
2011 Mar |
"Genomic Signatures of Strain Selection and Enhancement in Bacillus var. globigii, a Historical Biowarfare Simulant." PLoS One. |
|
| Ramirez, M.S., et al. |
2011 Mar |
"Genomic Analysis of Acinetobacter baumannii A118 by Comparison of Optical Maps." Antimicrobial Agents and Chemotherapy. |
|
| Blackburn, M.B., et al. |
2011 Mar |
"The Occurrence of Photorhabdus-Like Toxin Complexes in Bacillus thuringiensis." PLoS One. |
|
| 2009 - 2010 |
ShowHide |
| Song, J., et al. |
2010 Dec |
"Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites." Journal of Bacteriology. |
|
| Howden, B., et al. |
2010 Nov |
"Complete Genome Sequence of Staphylococcus aureus Strain JKD6008, an ST239 Clone of Methicillin-Resistant Staphylococcus aureus with Intermediate-Level Vancomycin Resistance." Journal of Bacteriology. |
|
| Johnson, P., et al. |
2010 Oct |
“A Sustained Hospital Outbreak of Vancomycin-Resistant Enterococcus faecium Bacteremia due to Emergence of van B E. faecium Sequence Type 203." Journal of Infectious Disease. |
|
| Chua, K., et al. |
2010 Oct |
"Complete Genome Sequence of Staphylococcus aureus Strain JKD6159, a Unique Australian Clone of ST93-IV Community Methicillin-Resistant Staphylococcus aureus." Journal of Bacteriology. |
|
| Saunders, M., et al. |
2010 Sep |
“Optical genetic mapping defines regions of chromosomal variation in serovars of S. enterica subsp. enterica of concern for human and animal health.” Epidemiology and Infection. |
|
| Giongo, A., et al. |
2010 Jun |
"Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAI 5, suggest a new standard in geome sequence submillion." Standards in Genome Sciences. |
|
| Chen, C., et al. |
2010 May |
"Genome Sequence of Naturally Competent Aggregatibacter actinomycetemcomitans Serotype a Strain D7S-1." Journal of Bacteriology. |
|
| Garrigues, C., et al. |
2010 May |
"Complete Genome Sequence of Bifidobacterium animalis subsp. Lactis BB-12, a Widely Consumed Probiotic Strain." Journal of Bacteriology. |
|
| Fujisawa, T., et al. |
2010 Apr |
“Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.” DNA Research. |
|
| Nagarajan, N., et al. |
2010 Apr |
“Finishing genomes with limited resources: lessons from an ensemble of microbial genomes.” BMC Genomics. |
|
| Chen, P.E., et al. |
2010 Jan |
"Genomic characterization of the Yersinia genus." Genome Biology. |
|
| Shukla, S.K., et al. |
2009 Sep |
"Optical Mapping Reveals A Large Genetic Inversion between Two Methicillin-Resistant Staphylococcus aureus Strains." Journal of Bacteriology. |
|
| Barrangou, R. et al. |
2009 Jul |
"Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04." Journal of Bacteriology. |
|
| Nakao, Y., et al. |
2009 Apr |
"Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid." DNA Research. |
|
| Baba, T., et al. |
2009 Feb |
"Complete Genome Sequence of Macrococcus caseolyticus Strain JSCS5402, Reflecting the Ancestral Genome of the Human-Pathogenic Staphylococci." Journal of Bacteriology. |
|
| Wu, C.W., et al. |
2009 Jan |
"Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome." BMC Genomics. |
|
| 2007 - 2008 |
ShowHide |
| Kotewicz, M.L., et al. |
2008 Nov |
"Optical mapping and 454 sequencing of Escherichia coli O157:H7 isolates linked to the US 2006 spinach-associated outbreak." Microbiology. |
|
| Nagarajan, N., et al. |
2008 Jul |
"Scaffolding and validation of bacterial genome assemblies using optical restriction maps." Bioinformatics. |
|
| Ananiev, G.E., et al. |
2008 Jul |
"Optical mapping discerns genome wide DNA methylation profiles." BMC Molecular Biology. |
|
| Latreille, P., et al. |
2007 Sep |
"Optical mapping as a routine tool in bacterial genome sequencing." BMC Genomics. |
|
| Mussmann, M., et al. |
2007 Sep |
"Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments." PLoS Biol. |
|
| Kotewicz, M.L., et al. |
2007 Jun |
"Optical maps distinguish individual strains of Escherichia coli O157:H7." Microbiology. |
|
| van het Hoog, M., et al. |
2007 Jun |
"Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes." Genome Biology. |
|
| 2005 - 2006 |
ShowHide |
| Chen, Q., et al. |
2006 Apr |
"Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12." Microbiology. |
|
| Galagan, J.E., et al. |
2005 Dec |
"Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae." Nature. |
|
| Machida, M., et al. |
2005 Dec |
"Genome sequencing and analysis of Aspergillus oryzae." Nature. |
|
| Nierman, W.C., et al. |
2005 Dec |
"Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus." Nature. |
|
| Presentations and Posters |
|---|
| Author | Date | Title | Place | PDF |
| Berriman, M., et al. |
2011 Nov |
"Combined assemblies enable insight into thesubtelomeric organization of Plasmodium falciparum" |
CSHL, Genome Informatics |
|
| Xiao, N. et al. |
2011 Oct |
"Application of Argus® Whole Genome Mapping System in Analysis of Large Complex Genomes" |
ASHG |
|
| Ramirez, M.S., et al. |
2011 Sep |
"Genomic Analysis of Multidrug Resistant (MDR) Klebsiella pneumoniae (Kpn) Clinical Isolates by Optical Maps Comparison" |
ICAAC |
|
| Wagner, T., et al. |
2011 Sep |
"Optical Mapping Assembly and Validation of Whole Genome Sequencing (WGS) During an Outbreak of Vibrio choleraein Haiti" |
15th APHL |
|
| Dunn, M., et al. |
2011 Sep |
"Optical Mapping as a Complimentary Technology to NGS" |
UK NGS Meeting |
|
| Riley, M.C., et al. |
2011 Aug |
"Comparative Genomics of Serial Isolates: Can Genome Mapping Provide a Road Map for Clinicians?" |
ATACCC |
|
| Briska, A., et al. |
2011 Jun |
"Genomic Structural changes in Long Term E.coli Evolution Found by Optical Mapping" |
ASM |
|
| Hubbard, K., et al. |
2011 Jun |
"Optical Mapping as an Adjunct to Bacterial Genome Sequence Finishing" |
SFAF |
|
| Wagner, T., et al. |
2011 Jun |
"Use of the Argus™ Optical Mapping System to Validate Finished Microbial Genomes" |
SFAF |
|
| Ingram, L., et al. |
2011 May |
"Optical mapping and sequencing of ethanologenic E. coli strain KO11 genome reveals 20-copy tandem duplication of Z. mobilis pdcand adhBgenes" |
33rd Symposium on Biotechnology for Fuels and Chemicals |
|
| Zentz, E.B., et al. |
2011 May |
"Using the Argus Optical Mapping System to Investigate a Salmonella enterica serovar Saintpaul Outbreak Occurring in Alfalfa Sprouts" |
ECCMID |
|
| Lacher, D.W. |
2011 May |
R-2458: Optical Mapping of the EHEC 2 Clonal Group of Pathogenic Escherichia coli |
ASM |
|
| Waterman, P., et al. |
2011 Apr |
"The Multidrug-resistant Organism Repository and Surveillance Network: Program Announcement and Early Results" |
SHEA |
|
| Broomall, S., et al. |
2011 Apr |
"Comparative Genomics Using Optical Mapping as an Adjunct to Whole Genome Sequencing" |
ECBA |
|
| Baldwin, C., et al. |
2011 Apr |
"Determination of Regions of Variability in Bacillus Species Using Optical Mapping as Diagnostic Indicators" |
ASMB |
|
| Xiao, N., et al. |
2011 Feb |
"A New Method for Long Range Scaffolding using Optical Mapping" |
AGBT |
|
| Kumar., D., et al. |
2011 Jan |
"Bacterial Genome Finishing Using Optical Mapping" |
PAG |
|
| 2009 - 2010 |
ShowHide |
| Sotto, A. et. al. |
2010 Jun |
"Optical Mapping Reveals A Genetic Insertion In Colonizing Staphylococcus Aureus Isolated From Diabetic Foot Ulcers" |
ASM |
|
| Kumar., D., et al. |
2010 Jun |
"Use of Optical Mapping in Bacterial Genome Finishing" |
SFAF |
|
| Miller, W.G., et al. |
2010 Mar |
"Comparative genomics of the genus Campylobacter: analysis of all 24 described Campylobacter species" |
ASM |
|
| Miller, W.G., et al. |
2010 Jan |
"The Complete Genome of the Human Clinical Isolate Campylobacter upsaliensis RM3195." |
- |
|
| Dykes, C.W. |
2009 Dec |
"Characterization of Salmonella enterica Subtypes by Optical Mapping" |
- |
|
| Dykes, C.W. |
2009 Sep |
"Rapid Identification of Salmonella Subtypes by Optical Mapping " |
DARPA |
|
| Wagner, T. et al. |
2009 Jun |
"Use of Optical Mapping to Identify Prophages in Virulence in Pseudomonas aeruginosa." |
ECCMID |
|
| Henkhaus, J. et al. |
2009 Jun |
"Identification and Differentiation of Enterococcus species by Optical Mapping." |
ASM |
|
| Durfee, T. et al. |
2009 Jun |
"Toward Annotated Bacterial Genomes in a Day" |
ASM |
|
| Barreau, G. et al. |
2009 Jun |
"Finishing a Bacterial Genome with a Graph and an Optical Map" |
SFAF |
|
| Briska, A. et al. |
2009 Jun |
"A Software System for Validating and Orienting Sequence Contigs Using Optical Maps" |
ASM |
|
| Bartell, J. et al |
2009 Jun |
"Molecular Characterization of Microbacterium Species Recovered from Clinical Ocular and Otic Samples" |
ASM |
|
| Barreau, G. et al |
2009 Jun |
"Optical mapping as a means of scaffolding difficult to assemble bacterial genomes: a case study with Lactobacillus helveticus" |
SIM |
|
| Chua, K. et. al. |
2009 Jun |
"Whole Genome Sequence of ST93-MRSA-IV, a Unigue Australian Clone of Community-Associated, Methicillin-Resistant Staphylococcus aureus" |
ICAAC |
|
| Buboltz, A.M. et. al. |
2009 Jun |
"Examining Virulence Evolution of Bordetella bronchiseptica using comparative genomics" |
Microbial Genomics Meeting |
|
| Wu, G. et. al. |
2009 Jun |
"Towards a Systems Biology Approach:Comparative studies of Salmonella entericaserotype Newport strains from the US and the UK to understand the emergence of multi-drug resistant (MDR) strains" |
ASM |
|
| Moore, R. et. al. |
2009 Jun |
"Rapid Microbial Identification though the Application of Cartridge-Based Optical Mapping" |
AMP |
|
| 2007 - 2008 |
ShowHide |
| Briska, A. et al. |
2008 Jun |
"Optical Mapping Highlights Genomic Diversity for Escherichia coli Clinical Isolates." |
ICAAC |
|
| Stahl, B. et al. |
2008 Jun |
"The Use of Optical Mapping to Identify Pathogenicity Motifs in Staphylococcus aureus Clinical Isolates." |
ICAAC |
|
| Wagner, T. et al. |
2008 Jun |
"Use of Optical Mapping to Identify Bacteria from Complex Mixture and Clinical Samples." |
ICAAC |
|
| Bartell, J.G. et al. |
2008 Jun |
"Characterization of Staphylococcal Isolates by Traditional Methods and Optical Mapping." |
R-025, ASM |
|
| Kotewicz, M.L. et al. |
2008 Jun |
"Characterization by Optical Mapping of Three Archetypal Chromosomes of Escherichia coli O157:H7 Involved in Three 2006 Outbreaks of E. coli associated with Fresh Produce" |
H-125, ASM |
|
| 2005 - 2006 |
ShowHide |
| Henkhaus et al. |
2006 Jun |
"Comparative Genomics with Optical Mapping: Identifying Genomic Differences in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus." |
14th Annual International Meeting on Microbial Genomics |
|
| Briska, A. et al. |
2006 Jun |
"The Utilization of Optical Mapping in Whole Genome Finishing." |
14th Annual International Meeting on Microbial Genomics |
|
| Henkhaus, J. et al. |
2005 Jun |
"Whole Genome Analysis and Comparison using Optical Mapping." |
Molecular Medicine Tri-Conference |
|
| Anantharaman TS, et al. |
2005 Jun |
"Fast and cheap genome wide haplotype construction via Optical Mapping." Pac Symp Biocomput. 2005:385-96. |
Pac Symp Biocomput |
|
| Cebula, TA. |
2005 Jun |
"DNA Detection Strategies: Sequences, Signatures and Significance." Transcript. |
Transcript. https://www.ift.org |
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