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Presentations & Posters

⊕2011 – 2012

Argus® Whole Genome Mapping System and New Computational Applications Are Used to Improve Sequence Assembly and Structural Variant Analysis
| Mar 2012 | Newburn, E., et al. | X-Gen Congress | File Size: 1202KB |
A Whole Genome Reference Sequence of Amborella
| Feb 2012 | Chamala, S., et al. | AGBT | File Size: 1133KB |
A High-Throughput Pipeline for Improving Assemblies with Optical Maps
| Feb 2012 | White, O., et al. | AGBT | File Size: 933KB |
Long–range Scaffolding and Structural Variation Analysis of Human Genomes with Whole Genome Mapping
| Feb 2012 | Xiao, N., et al. | AGBT | File Size: 571KB |
Optimization of NextGen sequencing and assembly strategy for microbial genomes
| Feb 2012  | Prasada, A., et al. | AGBT | File Size: 735KB |
Combinatorial Data Sets: Pragmatic Applications Derived from Multiple Sequencing Technologies
| Feb 2012  | Magrini, V., et al. | AGBT | File Size: 3.6MB |
Genome size evolution in the genus Genlisea from half of the A. thaliana genome to the twenty-fold
| Jan 2012 | Vu, GT.H., et al. | PAG | File Size: 1.8MB |
The Amborella Genome Sequencing Project: Generating an Evolutionary Reference
| Jan 2012 | Der, J., et al. | PAG | File Size: 4MB |
Combined assemblies enable insight into thesubtelomeric organization of Plasmodium falciparum
| Nov 2011 | Berriman, M., et al. | CSHL | File Size: 3MB |
Application of Argus® Whole Genome Mapping System in Analysis of Large Complex Genomes
| Oct 2011 | Xiao, N. et al. | ASHG | File Size: 539Kb |
Genomic Analysis of Multidrug Resistant (MDR) Klebsiella pneumoniae (Kpn) Clinical Isolates by Optical Maps Comparison
| Sep 2011 | Ramirez, M.S., et al. | ICAAC | File Size: 3MB |
Optical Mapping Assembly and Validation of Whole Genome Sequencing (WGS) During an Outbreak of Vibrio choleraein Haiti
| Sep2011 | Wagner, T., et al. | 15th APHL | File Size: 1MB |
Optical Mapping as a Complimentary Technology to NGS
| Sep 2011 | Dunn, M., et al. | UK NGS Meeting | File Size: 892Kb |
Comparative Genomics of Serial Isolates: Can Genome Mapping Provide a Road Map for Clinicians?
| Aug 2011 | Riley, M.C., et al. | ATACC | File Size: 894Kb |
Genomic Structural changes in Long Term E.coli Evolution Found by Optical Mapping
| June 2011 | Briska, A., et al. | ASM | File Size: 3Mb |
Optical Mapping as an Adjunct to Bacterial Genome Sequence Finishing
| June 2011 | Hubbard, K., et al. | SFAF | File Size: 4Mb |
Use of the Argus™ Optical Mapping System to Validate Finished Microbial Genomes
| May 2011 | Ingram, L., et al. | 33rd SBFC | File Size: 532Kb |
Evaluation of a novel fluorescent amplified fragment length polymorphism assay and
optical mapping to probe the genetic diversity of Staphylococcus aureus
| May 2011 | Desai, D., et al. | ECCMID | File Size: 817KB |
Using the Argus Optical Mapping System to Investigate a Salmonella enterica serovar Saintpaul Outbreak Occurring in Alfalfa Sprouts
| May 2011 | Zentz, E.B., et al. | ECCMID | File Size: 1Mb |
The Multidrug-resistant Organism Repository and Surveillance Network: Program Announcement and Early Results
| April 2011 | Waterman, P., et al. | SHEA | File Size: 698Kb |
Comparative Genomics Using Optical Mapping as an Adjunct to Whole Genome Sequencing
| April 2011 | Broomall, S., et al. | ECBC | File Size: 3Mb |
Determination of Regions of Variability in Bacillus Species Using Optical Mapping as Diagnostic Indicators
| April 2011 | Baldwin, C., et al. | ASMB | File Size: 2Mb |
A New Method for Long Range Scaffolding using Optical Mapping
| February 2011 | Xiao, N., et al. | AGBT | File Size: 117Kb |
Bacterial Genome Finishing Using Optical Mapping
| Janurary 2011 | Kumar., D., et al. | PAG | File Size: 812Kb |

⊕2010

Optical Mapping Reveals A Genetic Insertion In Colonizing Staphylococcus Aureus Isolated From Diabetic Foot Ulcers
| June 2010 | Sotto, A. et. al. | ASM | File Size: 194Kb |
Use of Optical Mapping in Bacterial Genome Finishing
| June 2010 | Kumar., D., et al. | SFAF | File Size: 404Kb |
Comparative genomics of the genus Campylobacter: analysis of all 24 described Campylobacter species
| March 2010 | Miller, W.G., et al. | ASM | File Size: 5Mb |
The Complete Genome of the Human Clinical Isolate Campylobacter upsaliensis RM3195
| January 2010 | Miller, W.G., et al. | ASM | File Size: 125Kb |

⊕2008 – 2009

Characterization of Salmonella enterica Subtypes by Optical Mapping
| December 2009 | Dykes, C.W. | ASM | File Size: 1Mb |
Rapid Identification of Salmonella Subtypes by Optical Mapping
| September 2009 | Dykes, C.W. | DARPA | File Size: 756Kb |
Use of Optical Mapping to Identify Prophages in Virulence in Pseudomonas aeruginosa
| June 2009 | Wagner, T. et al. | ECCMID | File Size: 3Mb |
Identification and Differentiation of Enterococcus species by Optical Mapping
| June 2009 | Henkhaus, J. et al. | ASM | File Size: 2Mb |
Toward Annotated Bacterial Genomes in a Day
| June 2009 | Durfee, T. et al. | ASM | File Size: 3Mb |
Finishing a Bacterial Genome with a Graph and an Optical Map
| June 2009 | Barreau, G. et al. | SFAF | File Size: 2Mb |
A Software System for Validating and Orienting Sequence Contigs Using Optical Maps
| June 2009 | Briska, A. et al. | ASM | File Size: 5Mb |
Molecular Characterization of Microbacterium Species Recovered from Clinical Ocular and Otic Samples
| June 2009 | Bartell, J. et al. | ASM | File Size: 394Kb |
Optical mapping as a means of scaffolding difficult to assemble bacterial genomes: a case study with Lactobacillus helveticus
| June 2009 | Barreau, G. et al. | SIM | File Size: 535Kb |
Whole Genome Sequence of ST93-MRSA-IV, a Unigue Australian Clone of Community-Associated, Methicillin-Resistant Staphylococcus aureus
| June 2009 | Chua, K. et. al. | ICAAC | File Size: 1Mb |
Examining Virulence Evolution of Bordetella bronchiseptica using comparative genomics
| June 2009 | Buboltz, A.M. et. al. | MGM | File Size: 335Kb |
Towards a Systems Biology Approach:Comparative studies of Salmonella entericaserotype Newport strains from the US and the UK to understand the emergence of multi-drug resistant (MDR) strains
| June 2009 | Wu, G. et. al. | ASM | File Size: 152Kb |
Rapid Microbial Identification though the Application of Cartridge-Based Optical Mapping
| June 2009 | Moore, R. et. al. | AMP | File Size: 197Kb |
Optical Mapping Highlights Genomic Diversity for Escherichia coli Clinical Isolates
| June 2008 | Briska, A. et al. | ICAAC | File Size: 2Mb |
The Use of Optical Mapping to Identify Pathogenicity Motifs in Staphylococcus aureus Clinical Isolates
| June 2008 | Stahl, B. et al. | ICAAC | File Size: 1Mb |
Use of Optical Mapping to Identify Bacteria from Complex Mixture and Clinical Samples
| June 2008 | Wagner, T. et al. | ICAAC | File Size: 148Kb |
Characterization of Staphylococcal Isolates by Traditional Methods and Optical Mapping
| June 2008 | Bartell, J.G. et al. | ASM | File Size: 1Mb |
Characterization by Optical Mapping of Three Archetypal Chromosomes of Escherichia coli O157:H7 Involved in Three 2006 Outbreaks of E. coli associated with Fresh Produce
| June 2008 | Kotewicz, M.L. et al. | ASM | File Size: 100Kb |

⊕2006 – 2005