Publications
Publications |
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| Author | Date | Reference | Abstract |
|---|---|---|---|
| Li, Z. et al. | 2011 Dec | Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph. Briefing in Functional Genomics. | Link |
| Eppinger, M. et al. | 2011 Dec | Genomic anatomy of Escherichia coli O157:H7 outbreaks. PNAS. | Link |
| Jackson et al. | 2011 Dec | Rapid Genomic-Scale Analysis of Escherichia coli O104:H4 Using High-Resolution. Applied Environmental Microbiology | Link |
| Riley et al. | 2011 Nov | Optically Mapping Multiple Bacterial Genomes. PLoS One. | Link |
| Chaston et al. | 2011 Nov | The Entomopathogenic Bacterial Endosymbionts. PLoS One. | Link |
| Turner et al. |
2011 Nov |
Optical mapping and sequencing of the Escherichia coli KO11. Journal of Industrial Microbiological Biotechnology. | Link |
| Brown, C.T., et al. | 2011 Oct | “Whole-Genome Sequencing and Phenotypic Analysis of Bacillus subtilis Mutants Following Evolution under Conditions of Relaxed Selection for Sporulation.” Applied and Environmental Microbiology. | |
| Weill, F-X., et al. | 2011 Oct | “Escherichia coli O104:H4 South-West France, June 2011.” The Lancet. | |
| Desjardins, C.A., et al. | 2011 Oct | “Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis.” PLoS Genetics. | |
| Schott, T., et al. | 2011 Oct | “Comparative Genomics of Helicobacter pylori and the human-derivedHelicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans.” BMC Genomics. | |
| Turner, P.C., et al. | 2011 Oct | “Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes.” Journal of Industrial Microbiology & Biotechnology. | |
| Wang, N. et al. | 2011 Sep | “Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1 causing citrus bacterial spot and related strains provides insights into virulence and host-specificity.” Journal of Bacteriology. | |
| Santos, A., et al. | 2011 Sep | “Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence.” Veterinary Research. | |
| Riley, M.C., et al. | 2011 Aug | “Rapid Whole Genome Optical Mapping of Plasmodium falciparum.” Malaria Journal. | |
| Mellmann, A., Harmsen, D., et al. | 2011 Jul | “Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology.” PLoS One. | |
| Ziegler, D.R. | 2011 Jul | “The genome sequence of Bacillus subtillus subsp. Spizizenii W23:insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics.” Microbiology. | |
| Fricke, W.F., et al. | 2011 Jul | “Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-mediated Adaptive Sublineage Evolution.” Journal of Bacteriology. | |
| Petersen, R.F., et al. | 2011 Jun | “Molecular Characterization of Salmonella Typhimurium Highly Successful Outbreak Strains.” Foodborne Pathogens and Disease. | |
| Eppinger, M., et al. | 2011 May | “Genome Signatures of Escherichia coli O157:H7 Isolates from the Bovine Host Reservoir.” Applied Environmental Microbiology. | |
| Macklaim, J.M., et al. | 2011 Mar | “At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1.” PNAS. | |
| Gibbons, H.S., et al. | 2011 Mar | “Genomic Signatures of Strain Selection and Enhancement in Bacillus var. globigii, a Historical Biowarfare Simulant.” PLoS One. | |
| Ramirez, M.S., et al. | 2011 Mar | “Genomic Analysis of Acinetobacter baumannii A118 by Comparison of Optical Maps.” Antimicrobial Agents and Chemotherapy. | |
| Blackburn, M.B., et al. | 2011 Mar | “The Occurrence of Photorhabdus-Like Toxin Complexes in Bacillus thuringiensis.” PLoS One. | |
| Song, J., et al. | 2010 Dec | “Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites.” Journal of Bacteriology. | |
| Howden, B., et al. | 2010 Nov | “Complete Genome Sequence of Staphylococcus aureus Strain JKD6008, an ST239 Clone of Methicillin-Resistant Staphylococcus aureus with Intermediate-Level Vancomycin Resistance.” Journal of Bacteriology. | |
| Johnson, P., et al. | 2010 Oct | “A Sustained Hospital Outbreak of Vancomycin-Resistant Enterococcus faecium Bacteremia due to Emergence of van B E. faecium Sequence Type 203.” Journal of Infectious Disease. | |
| Chua, K., et al. | 2010 Oct | “Complete Genome Sequence of Staphylococcus aureus Strain JKD6159, a Unique Australian Clone of ST93-IV Community Methicillin-Resistant Staphylococcus aureus.” Journal of Bacteriology. | |
| Saunders, M., et al. | 2010 Sep | “Optical genetic mapping defines regions of chromosomal variation in serovars of S. enterica subsp. enterica of concern for human and animal health.” Epidemiology and Infection. | |
| Giongo, A., et al. | 2010 Jun | “Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAI 5, suggest a new standard in geome sequence submillion.” Standards in Genome Sciences. | |
| Chen, C., et al. | 2010 May | “Genome Sequence of Naturally Competent Aggregatibacter actinomycetemcomitans Serotype a Strain D7S-1.” Journal of Bacteriology. | |
| Garrigues, C., et al. | 2010 May | “Complete Genome Sequence of Bifidobacterium animalis subsp. Lactis BB-12, a Widely Consumed Probiotic Strain.” Journal of Bacteriology. | |
| Fujisawa, T., et al. | 2010 Apr | “Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.” DNA Research. | |
| Nagarajan, N., et al. | 2010 Apr | “Finishing genomes with limited resources: lessons from an ensemble of microbial genomes.” BMC Genomics. | |
| Chen, P.E., et al. | 2010 Jan | “Genomic characterization of the Yersinia genus.” Genome Biology. | |
| 2008 – 2009 | |||
| Shukla, S.K., et al. | 2009 Sep | “Optical Mapping Reveals A Large Genetic Inversion between Two Methicillin-Resistant Staphylococcus aureus Strains.” Journal of Bacteriology. | |
| Barrangou, R. et al. | 2009 Jul | “Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.” Journal of Bacteriology. | |
| Nakao, Y., et al. | 2009 Apr | “Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid.” DNA Research. | |
| Baba, T., et al. | 2009 Feb | “Complete Genome Sequence of Macrococcus caseolyticus Strain JSCS5402, Reflecting the Ancestral Genome of the Human-Pathogenic Staphylococci.” Journal of Bacteriology. | |
| Wu, C.W., et al. | 2009 Jan | “Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome.” BMC Genomics. | |
| Kotewicz, M.L., et al. | 2008 Nov | “Optical mapping and 454 sequencing of Escherichia coli O157:H7 isolates linked to the US 2006 spinach-associated outbreak.” Microbiology. | |
| Nagarajan, N., et al. | 2008 Jul | “Scaffolding and validation of bacterial genome assemblies using optical restriction maps.” Bioinformatics. | |
| Ananiev, G.E., et al. | 2008 Jul | “Optical mapping discerns genome wide DNA methylation profiles.” BMC Molecular Biology. | |
| 2006 – 2007 | |||
| Latreille, P., et al. | 2007 Sep | “Optical mapping as a routine tool in bacterial genome sequencing.” BMC Genomics. | |
| Mussmann, M., et al. | 2007 Sep | “Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments.” PLoS Biol. | |
| Kotewicz, M.L., et al. | 2007 Jun | “Optical maps distinguish individual strains of Escherichia coli O157:H7.” Microbiology. | |
| van het Hoog, M., et al. | 2007 Jun | “Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes.” Genome Biology. | |
| Chen, Q., et al. | 2006 Apr | “Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12.” Microbiology. | |
| 2004 – 2005 | |||
| Galagan, J.E., et al. | 2005 Dec | “Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.” Nature. | |
| Machida, M., et al. | 2005 Dec | “Genome sequencing and analysis of Aspergillus oryzae.” Nature. | |
| Nierman, W.C., et al. | 2005 Dec | “Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.” Nature. | |