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Publications

⊕2011 – 2012

Virulence Potential and Genomic Mapping of the Worldwide Clone Escherichia coli ST131
| Mar 2012 | Lavigne, Jean-Philippe. et al. | PLoS One |
Complete Genome Sequence of Dairy Isolate Streptococcus macedonicus ACA-DC 198
| Mar 2012 | Papadimitriou, K. et al. | Journal of Bacteriology |
Genome Sequence and Analysis of a Type A Clostridium perfringens Isolate from a Case of Bovine Clostridial Abomasitis
| Mar 2012 | Nowell, V. et al. | PLoS One |
Genome Sequence of Staphylococcus aureus Strain 11819-97, an ST80-IV European Community-Acquired Methicillin-Resistant Isolate
| Mar 2012 | Stegger, M. et al. | Journal of Bacteriology |
Escherichia coli O104:H4 Infections and International Travel
| Mar 2012 | Alexander, DC. et al. | Emerging Infectious Disease |
Complete Genome Sequence of Staphylococcus aureus M013, a pvl-Positive, ST59-SCCmec Type V Strain Isolated in Taiwan
| Mar 2012 | Huang, TW. et al. | Journal of Bacteriology |
Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph
| Dec 2011 | Li, Z. et al. | Briefing in Functional Genomics |
Genomic anatomy of Escherichia coli O157:H7 outbreaks
| Dec 2011 | Eppinger, M. et al. | PNAS |
Rapid Genomic-Scale Analysis of Escherichia coli O104:H4 Using High-Resolution
| Dec 2011 | Jackson et al. | Applied Environmental Microbiology |
Optically Mapping Multiple Bacterial Genomes
| Nov 2011 | Riley et al. | PLoS One |
The Entomopathogenic Bacterial Endosymbionts
| Nov 2011 | Chaston et al. | PLoS One |
Optical mapping and sequencing of the Escherichia coli KO11
| Nov 2011 | Turner et al. | Journal of Industrial Microbiological Biotechnology |
Whole-Genome Sequencing and Phenotypic Analysis of Bacillus subtilis Mutants Following Evolution under Conditions of Relaxed Selection for Sporulation
| Oct 2011 | Brown, C.T., et al. | Applied and Environmental Microbiology |
Escherichia coli O104:H4 South-West France, June 2011
| Oct 2011 | Weill, F-X., et al. | The Lancet |
Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis
| Oct 2011 | Desjardins, C.A., et al. | PLoS Genetics |
Comparative Genomics of Helicobacter pylori and the human-derivedHelicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans
| Oct 2011 | Schott, T., et al. | BMC Genomics |
Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes
| Oct 2011 | Turner, P.C., et al. | Journal of Industrial Microbiology & Biotechnology |
Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1 causing citrus bacterial spot and related strains provides insights into virulence and host-specificity
| Sep 2011 | Wang, N. et al. | Journal of Bacteriology |
Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence
| Sep 2011 | Santos, A., et al. | Veterinary Research |
Rapid Whole Genome Optical Mapping of Plasmodium falciparum
| Aug 2011 | Riley, M.C., et al. | Malaria Journal |
Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology
| Jul 2011 | Mellmann, A., Harmsen, D., et al. | PLoS One |
The genome sequence of Bacillus subtillus subsp. Spizizenii W23:insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics
| Jul 2011 | Ziegler, D.R. | Microbiology |
Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-mediated Adaptive Sublineage Evolution
| Jul 2011 | Fricke, W.F., et al. | Journal of Bacteriology |
Molecular Characterization of Salmonella Typhimurium Highly Successful Outbreak Strains
| Jun 2011 | Petersen, R.F., et al. | Foodborne Pathogens and Disease |
Genome Signatures of Escherichia coli O157:H7 Isolates from the Bovine Host Reservoir
| May 2011 | Eppinger, M., et al. | Applied Environmental Microbiology |
At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1
| Mar 2011 | Macklaim, J.M., et al. | PNAS |
Genomic Signatures of Strain Selection and Enhancement in Bacillus var. globigii, a Historical Biowarfare Simulant
| Mar 2011 | Gibbons, H.S., et al. | PLoS One |
Genomic Analysis of Acinetobacter baumannii A118 by Comparison of Optical Maps
| Mar 2011 | Ramirez, M.S., et al | Antimicrobial Agents and Chemotherapy |
The Occurrence of Photorhabdus-Like Toxin Complexes in Bacillus thuringiensis
| Mar 2011 | Blackburn, M.B., et al | PLoS One |

⊕2010

Draft Genome Sequence of Streptomyces clavuligerus NRRL 3585, a Producer of Diverse Secondary Metabolites
| Dec 2010 | Song, J., et al. | Journal of Bacteriology |
Complete Genome Sequence of Staphylococcus aureus Strain JKD6008, an ST239 Clone of Methicillin-Resistant Staphylococcus aureus with Intermediate-Level Vancomycin Resistance
| Nov 2010 | Howden, B., et al. | Journal of Bacteriology |
A Sustained Hospital Outbreak of Vancomycin-Resistant Enterococcus faecium Bacteremia due to Emergence of van B E. faecium Sequence Type 203
| Oct 2010 | Johnson, P., et al. | Journal of Infectious Disease |
Complete Genome Sequence of Staphylococcus aureus Strain JKD6159, a Unique Australian Clone of ST93-IV Community Methicillin-Resistant Staphylococcus aureus
| Oct 2010 | Chua, K., et al. | Journal of Bacteriology |
Optical genetic mapping defines regions of chromosomal variation in serovars of S. enterica subsp. enterica of concern for human and animal health
| Sep 2010 | Saunders, M., et al. | Epidemiology and Infection |
Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAI 5, suggest a new standard in geome sequence submillion
| Jun 2010 | Giongo, A., et al. | Standards in Genome Sciences |
Genome Sequence of Naturally Competent Aggregatibacter actinomycetemcomitans Serotype a Strain D7S-1
| May 2010 | Chen, C., et al. | Journal of Bacteriology |
Complete Genome Sequence of Bifidobacterium animalis subsp. Lactis BB-12, a Widely Consumed Probiotic Strain
| May 2010 | Garrigues, C., et al. | Journal of Bacteriology |
Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39
| Apr 2010 | Fujisawa, T., et al. | DNA Research |
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes
| Apr 2010 | Nagarajan, N., et al. | BMC Genomics |
Genomic characterization of the Yersinia genus
| Jan 2010 | Chen, P.E., et al. | Genome Biology |

⊕2008 – 2009

⊕2005 – 2007