Resources - OpGen

Found 83 Results

- Date
- Product
- Title
- Authors
- Type
- 2023
- ARES
- An NDM-Producing Escherichia coli Clinical Isolate Exhibiting Resistance to Cefiderocol and the Combination of Ceftazidime-Avibactam and Aztreonam: Another Step Towards Pan-β-Lactam Resistance
- Patricia J Simner, Yehudit Bergman, Rick Conzemius, Emily Jacobs, Tsigereda Tekle, Stephan Beisken, Pranita D Tamma
- Publication
- 2023
- ARES
- Metagenomic Antimicrobial Susceptibility Testing from Simulated Native Patient Samples
- Lukas Lüftinger, Peter Májek, Thomas Rattei and Stephan Beisken
- Publication
- 2023
- ARES
- AI-Powered AMR Detection and Surveillance to Inform Antibiotic Precision Therapy
- Webinar
- 2022
- ARES
- Combination of phage therapy and cefiderocol to successfully treat Pseudomonas aeruginosa cranial osteomyelitis
- Patricia J. Simner, Jerald Cherian, Gina A. Suh, Yehudit Bergman, Stephan Beisken, Joseph Fackler, Martin Lee, Robert J. Hopkins, Pranita D. Tamma
- Publication
- 2022
- ARES
- Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae
- Rick Conzemius, Yehudit Bergman, Peter Májek, Stephan Beisken, Shawna Lewis, Emily B. Jacobs, Pranita D. Tamma and Patricia J. Simner
- Publication
- 2022
- ARES
- FED AMR – The role of free extracellular DNA in dissemination of antimicrobial resistance
- Webinar
- 2022
- Unyvero
- Combining DRIP Score and Rapid Diagnostics For Improved Antibiotic Stewardship
- Richard Ramirez, BS; Alemu Fite, PhD; and Matthew Sims, MD, PhD, FACP, FIDSA
- Poster
- 2022
- Acuitas
- Discovering the FDA-cleared Acuitas AMR Gene Panel: Building a Case for Clinical Utility
- Webinar
- 2022
- ARES
- Core Genome Multilocus Sequence Typing and Antibiotic Susceptibility Prediction from Whole-Genome Sequence Data of Multidrug-Resistant Pseudomonas aeruginosa Isolates
- Scott A. Cunningham, Allison R. Eberly, Stephan Beisken, Andreas E. Posch, Audrey N. Schuetz, Robin Patel
- Publication
- 2022
- ARES
- Applying Whole Genome Sequencing to Define and Predict Antimicrobial Resistance
- Webinar
- 2022
- ARES
- Optimized Method for Bacterial Nucleic Acid Extraction from Positive Blood Culture Broth for Whole-Genome Sequencing, Resistance Phenotype Prediction, and Downstream Molecular Applications
- Michelle J. Bauer, Anna Maria Peri, Lukas Lüftinger, Stephan Beisken, Haakon Bergh, Brian M. Forde, Cameron Buckley, Thom Cuddihy, Patrice Tan, David L. Paterson, David M. Whiley, Patrick N. A. Harris
- Publication
- 2022
- Acuitas
- Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection of an Extended Panel of Antimicrobial Resistance Genes among Bacterial Isolates
- Patricia J. Simner, Kimberlee A. Musser, Kara Mitchell, Mark G. Wise, Shawna Lewis, Rebecca Yee, Yehudit Bergman, Caryn E. Good, Ayman M. Abdelhamed, Henry Li, Erin M. Laseman, Dan Sahm, Kelsey Pitzer, Julia Quan, G. Terrance Walker, Michael R. Jacobs, Daniel D. Rhoads
- Publication
- 2022
- ARES
- Metagenomic Antimicrobial Susceptibility Testing from Simulated Native Patient Samples
- Lukas Lüftinger, Arne Materna, Thomas Rattei, Stephan Beisken
- Poster
- 2022
- ARES
- Beyond infection prevention and control: How genome sequencing of AMR pathogens can improve antibiotic stewardship and patient care
- Webinar
- 2022
- ARES
- Clinical Utility of Routine Whole Genome Sequencing of AMR Pathogens in Healthcare Settings
- Arne Materna, Stephan Beisken, Johannes Weinberger, Ines Ferreira, Peter Majek , Lukas Lüftinger, Theo deVos
- Poster
- 2022
- Unyvero
- Fast multiplex bacterial PCR of bronchoalveolar lavage for antibiotic stewardship in hospitalised patients with pneumonia at risk of Gram-negative bacterial infection (Flagship II): a multicentre, randomised controlled trial
- Andrei M Darie, Nina Khanna, Kathleen Jahn, Michael Osthoff, Stefano Bassetti, Mirjam Osthoff, Desiree M Schumann, Werner C Albrich, Hans Hirsch, Martin Brutsche, Leticia Grize, Michael Tamm, Daiana Stolz
- Publication
- 2022
- ARES
- Validation and Application of Long-Read Whole-Genome Sequencing for Antimicrobial Resistance Gene Detection and Antimicrobial Susceptibility Testing
- Thomas Weinmaier, Rick Conzemius, Yehudit Bergman, Shawna Lewis, Emily B. Jacobs, Pranita D. Tamma, Arne Materna, Johannes Weinberger, Stephan Beisken, Patricia J. Simner
- Publication
- 2022
- Unyvero
- Evaluation of a pneumonia multiplex PCR panel for detection of bacterial respiratory tract pathogens from serial specimens collected from hospitalized COVID‑19 patients
- Chaitanya Tellapragada, Karin Andersson Ydsten, Anders Ternhag, Christian G. Giske
- Publication
- 2022
- ARES
- Acinetobacter baumannii Genomic Sequence-Based Core Genome Multilocus Sequence Typing Using Ridom SeqSphere+ and Antimicrobial Susceptibility Prediction in ARESdb
- Madiha Fida, Scott A. Cunningham, Stephan Beisken, Andreas E. Posch, Nicholas Chia, Patricio R. Jeraldo, Matthew P. Murphy, Nicole M. Zinsmaster, Robin Patel, the Antibacterial Resistance Leadership Group
- Publication
- 2021
- Unyvero
- Clinical Evaluation of a Multiplex Molecular Diagnostic Lower Respiratory Tract Panel for Bronchoalveolar Lavage Specimens
- Poster
- 2021
- ARES
- Progressive Development of Cefiderocol Resistance in Escherichia coli During Therapy Is Associated with Increased blaNDM-5 Copy Number and Gene Expression
- Patricia J Simner, Heba H Mostafa, Yehudit Bergman, Michael Ante, Tsigereda Tekle, Ayomikun Adebayo, Stephan Beisken, Kathryn Dzintars, Pranita D Tamma
- Publication
- 2021
- ARES
- Capturing the Resistome: a Culture-free Approach Based on ARESdb
- Webinar
- 2021
- ARES
- Defining Baseline Mechanisms of Cefiderocol Resistance in the Enterobacterales
- Patricia J. Simner, Stephan Beisken, Yehudit Bergman, Michael Ante, Andreas E. Posch, and Pranita D. Tamma
- Publication
- 2021
- ARES
- Learning From Limited Data: Towards Best Practice Techniques for Antimicrobial Resistance Prediction From Whole Genome Sequencing Data
- Lüftinger L, Májek P, Beisken S, Rattei T, Posch A
- Publication
- 2021
- ARES
- Core Genome Multi-Locus Sequence Typing and Prediction of Antimicrobial Susceptibility Using Whole Genome Sequences of Escherichia coli Bloodstream Infection Isolates
- Ritu Banerjee, Scott A. Cunningham, Stephan Beisken, Andreas E. Posch, Brian Johnston, James R. Johnson, and Robin Patel
- Publication